miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21799493|gb|BQ658360.1|BQ658360 GGAGAAAGAAAATGCTGGCGAGCTCTTATATTGAACTAAGAAAGCAGGAATTTGGTTTTCCATGTATATATGCTCCCTCC
GTCCTAAACAAGTGTCACTCCTTAGTACTAAATTTACGACACTTATTTTGGGACGGAGTGAGTATTTACTTAACGTGATT
GACGGAGAAATGTTCAACGATTGTTCTGGATAAAATTATTTCGCCTGAGGCTTGTACTAAGTAGTCGTTGGCTTGTCATG
CGGGCGCCTTCAATGGCACTGAAATCCCTCTTTTACTGGATCATGAACATCATTCCTTAAACGCCAGTTCACAGACCAAT
GCGATATGATCACTTCCCCATTTCTTTGTGGGGAATCCAATTGTCTCCTTCAAAATCCCTTCTGGAAATGTATCTAGCAC
GCTAACAGTCTGAAGATCTTCAAAAGCCCATATGTAGTCCACTGTCCCCATAAATTTTCTGTTGTAACTGGTTACCAAGG
GCTCCTTATTGGCATCTTTTGTCCCATGAAAATCCTCCACATCTGTGTAGACACTCCTTACTTTCAAATTATGTTCCACA
TAAGTAC




Most similar to sp|Q8VYU4|CCR4F_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog
           6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2
          Length = 754

 Score =  110 bits (276), Expect = 4e-24
 Identities = 55/89 (61%), Positives = 66/89 (74%)
 Frame = -3

Query: 565 TYVEHNLKVRSVYTDVEDFHGTKDANKEPLVTSYNRKFMGTVDYIWAFEDLQTVSVLDTF 386
           T VEH L+++S Y++VE    T+D N EP+VTSY+R FMGTVDYIW  E LQTV VL   
Sbjct: 657 TTVEHALELKSTYSEVEGQANTRDENGEPVVTSYHRCFMGTVDYIWRSEGLQTVRVLAPI 716

Query: 385 PEGILKETIGFPTKKWGSDHIALVCELAF 299
           P+  ++ T GFPT KWGSDHIALV ELAF
Sbjct: 717 PKQAMQWTPGFPTPKWGSDHIALVSELAF 745